| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Only Human | 3 | 88 | Thursday November 13, 1986 |
| Prime Target | 2 | 50 | Thursday November 14, 1985 |
| Quest for Survival | 2 | 44 | Tuesday November 5, 1985 |
| Revenge of Bruticus | 2 | 64 | Wednesday January 8, 1986 |
| Roll for It | 1 | 5 | Saturday October 13, 1984 |
| S.O.S. Dinobots | 1 | 7 | Saturday October 27, 1984 |
| Sea Change | 2 | 53 | Wednesday November 20, 1985 |
| Starscream's Brigade | 2 | 63 | Tuesday January 7, 1986 |
| Starscream's Ghost | 3 | 74 | Thursday October 2, 1986 |
| Surprise Party | 3 | 77 | Thursday October 9, 1986 |
| The Autobot Run | 2 | 42 | Thursday October 31, 1985 |
| The Big Broadcast of 2006 | 3 | 87 | Wednesday November 12, 1986 |
| The Burden Hardest to Bear | 3 | 92 | Wednesday November 19, 1986 |
| The Core | 2 | 40 | Tuesday October 29, 1985 |
| The Dweller in the Depths | 3 | 83 | Thursday October 30, 1986 |
| The Face of Nijika | 3 | 93 | Thursday November 20, 1986 |
| The Five Faces of Darkness (1) | 3 | 66 | Monday September 15, 1986 |
| The Five Faces of Darkness (2) | 3 | 67 | Tuesday September 16, 1986 |
| The Five Faces of Darkness (3) | 3 | 68 | Wednesday September 17, 1986 |
| The Five Faces of Darkness (4) | 3 | 69 | Thursday September 18, 1986 |
| The Five Faces of Darkness (5) | 3 | 70 | Friday September 19, 1986 |
| The Gambler | 2 | 47 | Monday November 11, 1985 |
| The Girl Who Loved Powerglide | 2 | 51 | Monday November 18, 1985 |
| The God Gambit | 2 | 39 | Monday October 28, 1985 |
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