| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Meltdown | 2 | 20 | Saturday June 25, 2005 |
| Night and the City | 2 | 26 | Saturday September 10, 2005 |
| Pets | 2 | 19 | Saturday June 18, 2005 |
| Ragdolls to Riches | 2 | 22 | Saturday July 16, 2005 |
| Riddled | 2 | 15 | Saturday May 21, 2005 |
| Riddler's Revenge | 4 | 48 | Saturday February 17, 2007 |
| Ring Toss | 5 | 59 | Saturday December 8, 2007 |
| RPM | 3 | 31 | Saturday November 5, 2005 |
| Rumors | 4 | 50 | Saturday March 3, 2007 |
| Seconds | 4 | 47 | Saturday February 10, 2007 |
| Strange Minds | 2 | 25 | Saturday September 3, 2005 |
| Strange New World | 4 | 45 | Saturday November 18, 2006 |
| Swamped | 2 | 18 | Saturday June 11, 2005 |
| Team Penguin | 4 | 41 | Saturday September 30, 2006 |
| The Apprentice | 3 | 36 | Saturday February 11, 2006 |
| The Bat in the Belfry | 1 | 1 | Saturday September 11, 2004 |
| The Batman vs. Dracula | 3 | 26 | Tuesday October 18, 2005 |
| The Batman/Superman Story (1) | 5 | 53 | Saturday September 22, 2007 |
| The Batman/Superman Story (2) | 5 | 54 | Saturday September 29, 2007 |
| The Big Chill | 1 | 5 | Saturday November 6, 2004 |
| The Big Dummy | 1 | 9 | Saturday November 27, 2004 |
| The Big Heat | 1 | 7 | Saturday November 13, 2004 |
| The Breakout | 4 | 44 | Saturday November 11, 2006 |
| The Butler Did It | 2 | 23 | Saturday August 20, 2005 |
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