| Title | Season | Episode # | First Aired |
|---|---|---|---|
| The Elite Guard | 2 | 17 | Saturday April 12, 2008 |
| Return of the Headmaster | 2 | 18 | Saturday April 26, 2008 |
| Mission Accomplished | 2 | 19 | Saturday May 3, 2008 |
| Garbage In, Garbage Out | 2 | 20 | Saturday May 10, 2008 |
| Velocity | 2 | 21 | Saturday May 17, 2008 |
| Rise of the Constructicons | 2 | 22 | Saturday May 24, 2008 |
| A Fistful of Energon | 2 | 23 | Saturday May 31, 2008 |
| S. U. V. - Society of Ultimate Villainy | 2 | 24 | |
| Autoboot Camp | 2 | 25 | |
| Black Friday | 2 | 26 | |
| Sari, No One's Home | 2 | 27 | |
| A Bridge Too Close Part 1 | 2 | 28 | |
| A Bridge Too Close Part 2 | 2 | 29 |