| Title | Season | Episode # | First Aired |
|---|---|---|---|
| The Legend of the Fireflies | 3 | 63 | Tuesday October 14, 1997 |
| The Birth of Prince Yahiko | 3 | 64 | Tuesday October 28, 1997 |
| Find the Lost Treasure! | 3 | 65 | Tuesday November 4, 1997 |
| Kaoru, Ecstatic | 3 | 66 | Tuesday November 11, 1997 |
| The Gleaming Blade of Legends | 3 | 67 | Tuesday November 18, 1997 |
| The Medallion of Destiny | 3 | 68 | Tuesday November 11, 1997 |
| To the Battlefield of Shimabara | 3 | 69 | Tuesday December 2, 1997 |
| Shock of the Rai Ryu Sen | 3 | 70 | Tuesday December 9, 1997 |
| Kaiou's Conspiracy | 3 | 71 | Tuesday December 16, 1997 |
| The Days of Remorse | 3 | 72 | Tuesday January 6, 1998 |
| The Sneering Demon | 3 | 73 | Tuesday January 13, 1998 |
| Sanosuke's Tears | 3 | 74 | Tuesday January 20, 1998 |
| The Last Crusade | 3 | 75 | Tuesday January 27, 1998 |
| Bon Voyage | 3 | 76 | Tuesday February 3, 1998 |
| Himura Dojo in Shimonoseki? | 3 | 77 | Tuesday February 10, 1998 |
| Crush! | 3 | 78 | Tuesday February 17, 1998 |
| Kaishu-Katsu and Kenshin | 3 | 79 | Tuesday February 24, 1998 |
| The Unending Revolution | 3 | 80 | Tuesday March 3, 1998 |
| Conspiracy of the Beniaoi | 3 | 81 | Tuesday March 10, 1998 |
| Kaishu-Katsu's Determination | 3 | 82 | Tuesday April 14, 1998 |
| Yutaro Returns | 3 | 83 | Tuesday April 21, 1998 |
| The Sanada Ninja Squad | 3 | 84 | Tuesday May 5, 1998 |
| A Straying Journey | 3 | 85 | Tuesday May 19, 1998 |
| A Heatwave from Beneath the Earth | 3 | 86 | Saturday May 16, 1998 |
| Schneider's Bet | 3 | 87 | Tuesday June 2, 1998 |
| The Two Guides | 3 | 88 | Tuesday June 9, 1998 |
| To My Angel Misao | 3 | 89 | Tuesday June 16, 1998 |
| Feng Shui Surprise Attack! | 3 | 90 | Tuesday June 23, 1998 |
| The Magic of Feng Shui | 3 | 91 | Tuesday July 21, 1998 |
| Tokyo Under Martial Law | 3 | 92 | Tuesday August 4, 1998 |
| The Enemy Awaits in Senjogahara | 3 | 93 | Tuesday August 18, 1998 |
| The Elegy of Wind and Water | 3 | 94 | Tuesday September 8, 1998 |
| End of Wanderings | 3 | 95 |