| Title | Season | Episode # | First Aired |
|---|---|---|---|
| His Name is Unknown | 4 | 42 | Saturday January 14, 2006 |
| The Stray Dog | 4 | 43 | Saturday January 21, 2006 |
| Hohenheim of Light | 4 | 44 | Saturday January 28, 2006 |
| A Rotted Heart | 4 | 45 | Saturday February 4, 2006 |
| Human Transmutation | 4 | 46 | Saturday February 11, 2006 |
| Sealing the Homunculus | 4 | 47 | Saturday February 18, 2006 |
| Goodbye | 4 | 48 | Saturday February 25, 2006 |
| The Other Side of the Gate | 4 | 49 | Saturday March 4, 2006 |
| Death | 4 | 50 | Saturday March 11, 2006 |
| Laws and Promises | 4 | 51 | Saturday March 18, 2006 |
| Fullmetal Alchemist The Movie: Conqueror of Shamballa | 4 | 52 | Saturday November 17, 2007 |