| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Hoist the Johnny Roger / Johnny's Turbo Toy Force | 2 | 14 | Saturday October 28, 2006 |
| JTV / Johnny Mint Chip | 2 | 15 | Saturday November 4, 2006 |
| Johnny vs. Bling Bling 2 / Johnny's Got a Brand New Dad. | 2 | 16 | Saturday November 11, 2006 |
| Johnnyland / Saturday Night's Alright for Johnny | 2 | 17 | Saturday November 18, 2006 |
| Johnny's Pet Day / Phat Johnny | 2 | 18 | Saturday February 3, 2007 |
| The Revenge of Jonny X / The Enchanted Land of Johnnia | 2 | 19 | Saturday February 10, 2007 |
| 101 Johnnies / Johnny Zombie Tea Party | 2 | 20 | Saturday February 17, 2007 |
| Johnny Test in Black | 2 | 21 | Saturday February 24, 2007 |
| Down Hill Johnny / Johnny Meets the Pork-Ness Monster | 2 | 22 | Saturday March 3, 2007 |
| Johnny X Strikes Back / Johnny vs. Super Soaking Cyborgs | 2 | 23 | Saturday April 21, 2007 |
| 00-Johnny / Johnny of the Jungle | 2 | 24 | Saturday April 28, 2007 |
| Johnny vs. Smash Badger 3 / Johnny Bee Good | 2 | 25 | Saturday May 5, 2007 |
| The Good, the Bad | 2 | 26 | Saturday May 12, 2007 |