| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Those Who Would Challenge the Sun | 1 | 1 | Saturday October 4, 2003 |
| Body of Taboo | 1 | 2 | Saturday October 11, 2003 |
| Mom... | 1 | 3 | Saturday October 18, 2003 |
| Transmutation of Love | 1 | 4 | Saturday October 25, 2003 |
| Dash! Automail | 1 | 5 | Saturday November 1, 2003 |
| National Alchemist Qualification Test | 1 | 6 | Saturday November 8, 2003 |
| The Night the Chimera Cries | 1 | 7 | Saturday November 15, 2003 |
| Philosopher's Stone | 1 | 8 | Saturday November 22, 2003 |
| Silver Watch of the Dog of the Military | 1 | 9 | Saturday November 29, 2003 |
| Thief Siren | 1 | 10 | Saturday December 6, 2003 |
| Gravel Earth - Part One | 1 | 11 | Saturday December 13, 2003 |
| Gravel Earth - Part Two | 1 | 12 | Saturday December 20, 2003 |
| Flame vs. FullMetal | 1 | 13 | Saturday December 27, 2003 |