| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Kilobot Rising | 3 | 53 | Saturday September 13, 2003 |
| Fighting Temptation | 3 | 54 | Sunday September 14, 2003 |
| What the World Needs Now [a.k.a. Who is the Mystery Medafighter] | 3 | 55 | Saturday September 20, 2003 |
| Delivery Boy | 3 | 56 | Sunday September 21, 2003 |
| Scoop of the Century | 3 | 57 | Saturday September 27, 2003 |
| Robbed Zombies | 3 | 58 | Sunday September 28, 2003 |
| Lights, Camera... Robattle! | 3 | 59 | Saturday October 4, 2003 |
| Dark Alliance (1) | 3 | 60 | Saturday October 11, 2003 |
| Dark Alliance (2) | 3 | 61 | Saturday October 18, 2003 |
| Redrun-Away | 3 | 62 | Saturday October 25, 2003 |
| Erika's Secret Garden | 3 | 63 | Sunday October 26, 2003 |
| Metabee's Out of Body Exp | 3 | 64 | Saturday November 1, 2003 |
| The Bee's Rescue the Honey | 3 | 65 | Saturday November 8, 2003 |
| A Night In The Medabot Junkyard | 3 | 66 | Saturday November 15, 2003 |
| Once A Medafighter (1) | 3 | 67 | Saturday November 22, 2003 |
| Once A Medafighter (2) | 3 | 68 | Saturday December 6, 2003 |
| Title Flight | 3 | 69 | Saturday December 13, 2003 |
| The Agony of the Cheat | 3 | 70 | Saturday December 20, 2003 |
| It's the Medafighter Way | 3 | 71 | Sunday December 21, 2003 |
| Fall from Grace (1) | 3 | 72 | Saturday December 27, 2003 |
| Fall from Grace (2) | 3 | 73 | Sunday December 28, 2003 |
| Mystery Medafighter Unmasked? | 3 | 74 | Saturday January 3, 2004 |
| The Truth About Charlie | 3 | 75 | Sunday January 4, 2004 |
| Rok's Reborn | 3 | 76 | Saturday January 10, 2004 |
| I, Kilobot | 3 | 77 | Sunday January 11, 2004 |
| Thanks for the Memories | 3 | 78 | Saturday January 17, 2004 |
| How Spyke Got His Style Back | 3 | 79 | Sunday January 18, 2004 |
| The Medabot Straight Line Marathon | 3 | 80 | Saturday January 24, 2004 |
| Kung Fu For Thought | 3 | 81 | Sunday January 25, 2004 |
| Erika to the Rescue | 3 | 82 | |
| Rough on a Hot Tin Cat | 3 | 83 | Saturday February 14, 2004 |
| Meda-Forced | 3 | 84 | Sunday February 15, 2004 |
| Poor Miss Nae | 3 | 85 | Saturday February 21, 2004 |
| Mystery Medafighter . . . Revealed! (1) | 3 | 86 | Sunday February 22, 2004 |
| Winner Take All (2) [a.k.a. Medabots Are Friends] | 3 | 87 | Saturday February 28, 2004 |
| Transfusion Confusion | 3 | 88 | Sunday February 29, 2004 |
| Gryphon Doom (1) [a.k.a. Forbidden Evil Medal] | 3 | 89 | Saturday March 6, 2004 |
| Final Goodbyes (2) | 3 | 90 | Sunday March 7, 2004 |
| Into the Fire [aka- Shine! Spirit of Hope] (3) | 3 | 91 |