| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Megaman Stolen | 2 | 26 | Friday October 15, 2004 |
| SnakeMan's Survival Seven | 2 | 27 | Friday October 22, 2004 |
| Don't Mess With Mama Zap! | 2 | 28 | Tuesday November 30, 2004 |
| The Great Curry Battle | 2 | 29 | Wednesday December 1, 2004 |
| NetCity! | 2 | 30 | Saturday May 15, 2004 |
| The Virus Factory! | 2 | 31 | Saturday May 22, 2004 |
| Electronic Money Panic | 2 | 32 | Saturday June 26, 2004 |
| Countdown To Catastrophe! | 2 | 33 | Friday October 8, 2004 |
| DenTech City's Deep Freeze | 2 | 34 | Saturday June 5, 2004 |
| Crimson Flash! | 2 | 35 | |
| The CutMan Brothers! | 2 | 36 | |
| Guess Who's Coming To NetBattle? | 2 | 37 | Thursday December 2, 2004 |
| Chess Mess! | 2 | 38 | Tuesday December 7, 2004 |
| The Incredible Rush! | 2 | 39 | Wednesday December 8, 2004 |
| Working For Grave | 2 | 40 | Saturday July 10, 2004 |
| KnightMan's Betrayal! | 2 | 41 | Saturday July 3, 2004 |
| To The Moon! | 2 | 42 | Saturday June 12, 2004 |
| Mr. Wily's Legacy | 2 | 43 | Saturday July 17, 2004 |
| The NetMobile Grand Prix! | 2 | 44 | Saturday June 19, 2004 |
| The VirusBeast! | 2 | 45 | Saturday July 24, 2004 |
| Grave | 2 | 46 | Saturday July 31, 2004 |
| Bass | 2 | 47 | Saturday August 7, 2004 |
| The End Of The End | 2 | 48 | Saturday August 14, 2004 |
| The NetBattle Of The Hearts! | 2 | 49 | |
| Chisao's In Town | 2 | 50 | Tuesday November 23, 2004 |
| From Here To Revolutionary PET's | 2 | 51 | Thursday December 9, 2004 |
| Virus Busters! | 2 | 52 | Saturday August 21, 2004 |