| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Affixing Memories | 2 | 24 | Saturday March 20, 2004 |
| Al, Captured | 3 | 33 | Saturday May 29, 2004 |
| Beyond the Gate | 4 | 49 | Saturday September 18, 2004 |
| Body of Taboo | 1 | 2 | Saturday October 11, 2003 |
| Corruption of the Soul | 4 | 45 | Saturday August 21, 2004 |
| Created Human | 2 | 22 | Saturday March 6, 2004 |
| Crimson Glow | 2 | 21 | Saturday February 28, 2004 |
| Dante of the Deep Forest | 3 | 32 | Saturday May 15, 2004 |
| Dash! Automail | 1 | 5 | Saturday November 1, 2003 |
| Death | 4 | 50 | Saturday September 25, 2004 |
| Eastern Civil War | 3 | 39 | Saturday July 10, 2004 |
| Farewell | 4 | 48 | Saturday September 11, 2004 |
| Farewell | 4 | 48 | Saturday September 11, 2004 |
| Farewell Ceremony | 2 | 25 | Saturday March 27, 2004 |
| Flame vs. FullMetal | 1 | 13 | Saturday December 27, 2003 |
| Gravel Earth - Part One | 1 | 11 | Saturday December 13, 2003 |
| Gravel Earth - Part Two | 1 | 12 | Saturday December 20, 2003 |
| Guardian's Soul | 2 | 20 | Saturday February 21, 2004 |
| Heart of Steel | 2 | 23 | Saturday March 13, 2004 |
| Her Reason | 3 | 26 | Saturday April 3, 2004 |
| Hohemheim of Light | 4 | 44 | Saturday August 7, 2004 |
| Holy Mother | 3 | 41 | Saturday July 24, 2004 |
| Homunculus Seal | 4 | 47 | Saturday September 4, 2004 |
| Human Transmutation | 4 | 46 | Saturday August 28, 2004 |
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