| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Reflections OAV: Act 1 - Beginnings | 5 | 100 | Monday December 3, 2001 |
| Reflections OAV: Act 2 - End | 5 | 101 | Monday December 3, 2001 |
| Reverse-Blade Sword vs. Zanbatou | 1 | 5 | Friday March 21, 2003 |
| Revival of the Shinko Style | 1 | 20 | Friday April 11, 2003 |
| Run, Yahiko! | 1 | 18 | Wednesday April 9, 2003 |
| Rurouni Kenshin Motion Picture: Requiem for Patriots | 6 | 102 | Saturday December 20, 1997 |
| Rurouni Kenshin the Motion Picture: Samurai X | 6 | 103 | |
| Sanosuke's Betrayal | 1 | 23 | Wednesday April 16, 2003 |
| Sanosuke's Secret Training | 0 | ||
| Sanosuke's Tears | 3 | 74 | Tuesday January 20, 1998 |
| Schneider's Bet | 3 | 87 | Tuesday June 2, 1998 |
| Shock of the Rai Ryu Sen | 3 | 70 | Tuesday December 9, 1997 |
| Shock! Reverse Blade Sword Broken | 2 | 37 | Thursday June 19, 2003 |
| Striving For the Grand Championship | 1 | 13 | Thursday April 3, 2003 |
| Strongest Group of Ninjas | 1 | 9 | Thursday March 27, 2003 |
| Strongest Opponent From the Past | 2 | 29 | Monday June 9, 2003 |
| Swordsman of Sorrow | 1 | 3 | Wednesday March 19, 2003 |
| The Age Chooses Shishio? | 2 | 58 | Saturday September 20, 2003 |
| The Birth of Prince Yahiko | 3 | 64 | Tuesday October 28, 1997 |
| The Choice for Life | 2 | 61 | Saturday October 11, 2003 |
| The Creation of the Reverse-Blade Sword | 2 | 39 | Monday June 23, 2003 |
| The Crimson Pirate | 1 | 25 | Friday April 18, 2003 |
| The Days of Remorse | 3 | 72 | Tuesday January 6, 1998 |
| The Elegy of Wind and Water | 3 | 94 | Tuesday September 8, 1998 |
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