| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Four Musketurtles | 3 | 16 | Monday October 30, 1989 |
| Four Turtles and a Baby | 4 | 6 | Monday September 17, 1990 |
| Funny, They Shrunk Michaelangelo | 4 | 25 | Saturday October 13, 1990 |
| Get Shredder! | 8 | 1 | Saturday September 17, 1994 |
| Green with Jealousy | 3 | 36 | Monday December 4, 1989 |
| H.A.V.O.C. in the Streets (2) | 8 | 5 | Saturday October 15, 1994 |
| Hot-Rodding Teenagers From Dimension X | 1 | 4 | Thursday December 31, 1987 |
| Invasion of the Krangazoids | 7 | 25 | Saturday December 11, 1993 |
| Invasion of the Punk Frogs | 2 | 8 | Saturday November 19, 1988 |
| Invasion of the Turtle Snatchers | 3 | 26 | Tuesday November 14, 1989 |
| It Came From Beneath The Sewers (2) | 2 | 3 | Saturday October 15, 1988 |
| Krangenstein Lives! | 6 | 3 | Saturday September 26, 1992 |
| Landlord of the Flies | 5 | 9 | Saturday October 19, 1991 |
| Leatherhead Meets the Rat King | 3 | 34 | Wednesday November 29, 1989 |
| Leatherhead: Terror of the Swamp | 3 | 23 | Thursday November 9, 1989 |
| Leonardo Cuts Loose | 5 | 12 | Saturday October 26, 1991 |
| Leonardo is Missing | 6 | 2 | Saturday September 19, 1992 |
| Leonardo Lightens Up | 4 | 23 | Saturday September 29, 1990 |
| Leonardo Versus Tempestra | 4 | 35 | Saturday November 17, 1990 |
| Leonardo, The Renaissance Turtle | 5 | 15 | Wednesday October 9, 1991 |
| Menace Maestro, Please | 4 | 11 | Friday September 28, 1990 |
| Michaelangelo Meets Bugman | 4 | 31 | Saturday November 3, 1990 |
| Michaelangelo Meets Bugman Again | 5 | 5 | Saturday September 28, 1991 |
| Michaelangelo Meets Mondo Gecko | 5 | 2 | Saturday September 14, 1991 |
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