| Title | Season | Episode # | First Aired |
|---|---|---|---|
| The Turtle Terminator | 3 | 29 | Friday November 17, 1989 |
| The Turtles and the Hare (1) | 4 | 14 | Monday September 16, 1991 |
| The Unknown Ninja | 9 | 1 | Saturday September 16, 1995 |
| The Wrath of Medusa | 9 | 3 | Saturday September 30, 1995 |
| Too Hot to Handle | 6 | 6 | Saturday October 3, 1992 |
| Tower of Power | 7 | 1 | Saturday September 18, 1993 |
| Turtle Tracks | 1 | 1 | Monday December 28, 1987 |
| Turtle Trek | 8 | 8 | Saturday November 5, 1994 |
| Turtlemaniac | 4 | 7 | Tuesday September 18, 1990 |
| Turtles At the Earth's Core | 3 | 17 | Tuesday October 31, 1989 |
| Turtles of the Jungle | 4 | 2 | Tuesday September 11, 1990 |
| Turtles on the Orient Express | 7 | 10 | Saturday October 16, 1993 |
| Turtles on Trial | 3 | 3 | Wednesday September 27, 1989 |
| Turtles to the Second Power (3) | 10 | 5 | Saturday October 12, 1996 |
| Turtles, Turtles Everywhere | 3 | 22 | Wednesday November 8, 1989 |
| Unidentified Flying Leonardo | 4 | 41 | Saturday December 8, 1990 |
| Usagi Come Home | 3 | 37 | Tuesday December 5, 1989 |
| Usagi Yojimbo | 3 | 25 | Monday November 13, 1989 |
| Venice on the Half Shell | 7 | 4 | Saturday September 25, 1993 |
| Welcome Back, Polarisoids | 5 | 17 | Saturday November 16, 1991 |
| Were-Rats from Channel 6 | 4 | 24 | Saturday October 13, 1990 |
| What's Michaelangelo Good For? | 4 | 33 | Saturday November 10, 1990 |
| White Belt, Black Heart | 7 | 18 | Saturday November 13, 1993 |
| Wrath of the Rat King | 8 | 2 | Saturday September 24, 1994 |
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