| Title | Season | Episode # | First Aired |
|---|---|---|---|
| The Circus Train | 2 | 109 | Thursday November 6, 1986 |
| The Formula | 2 | 103 | Wednesday October 29, 1986 |
| The Heritage | 2 | 118 | Wednesday November 19, 1986 |
| The Jade Dragon | 2 | 108 | Wednesday November 5, 1986 |
| The Last Day | 2 | 110 | Friday November 7, 1986 |
| The Mad Bubbler | 2 | 79 | Thursday September 25, 1986 |
| The Mask of Gorgon | 2 | 78 | Wednesday September 24, 1986 |
| The Mossland Monster | 2 | 123 | Wednesday November 26, 1986 |
| The Mountain | 1 | 58 | Wednesday December 11, 1985 |
| The Shifter | 1 | 64 | Thursday December 19, 1985 |
| The Sound Stones | 2 | 83 | Wednesday October 1, 1986 |
| The Superpower Potion | 1 | 59 | Thursday December 12, 1985 |
| The Telepathy Beam | 2 | 99 | Thursday October 23, 1986 |
| The Thunderscope | 2 | 107 | Tuesday November 4, 1986 |
| The Transfer | 1 | 54 | Thursday December 5, 1985 |
| The Trouble with Thunderkittens | 1 | 62 | Tuesday December 17, 1985 |
| The Wild Workout | 2 | 106 | Monday November 3, 1986 |
| The Zaxx Factor | 2 | 128 | Wednesday December 3, 1986 |
| ThunderCats Ho! (1) | 2 | 66 | Wednesday September 10, 1986 |
| ThunderCats Ho! (2) | 2 | 67 | Wednesday September 10, 1986 |
| ThunderCats Ho! (3) | 2 | 68 | Wednesday September 10, 1986 |
| ThunderCats Ho! (4) | 2 | 69 | Wednesday September 10, 1986 |
| ThunderCats Ho! (5) | 2 | 70 | Wednesday September 10, 1986 |
| ThunderCubs (1) | 2 | 91 | Monday October 13, 1986 |
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