| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Dinobot Island (2) | 2 | 20 | Thursday September 26, 1985 |
| Divide and Conquer | 1 | 6 | Saturday October 20, 1984 |
| Enter the Nightbird | 2 | 22 | Monday September 30, 1985 |
| Fight or Flee | 3 | 80 | Wednesday October 15, 1986 |
| Fire in the Sky | 1 | 13 | Saturday December 8, 1984 |
| Fire on the Mountain | 1 | 15 | Saturday December 22, 1984 |
| Forever Is a Long Time Coming | 3 | 76 | Wednesday October 8, 1986 |
| Ghost in the Machine | 3 | 82 | Tuesday October 21, 1986 |
| Golden Lagoon | 2 | 43 | Monday November 4, 1985 |
| Grimlock's New Brain | 3 | 89 | Friday November 14, 1986 |
| Heavy Metal War | 1 | 14 | Saturday December 15, 1984 |
| Hoist Goes Hollywood | 2 | 54 | Thursday November 21, 1985 |
| Kremzeek! | 2 | 62 | Friday December 27, 1985 |
| Madman's Paradise | 3 | 78 | Monday October 13, 1986 |
| Make Tracks | 2 | 41 | Wednesday October 30, 1985 |
| Masquerade | 2 | 58 | Monday December 16, 1985 |
| Megatron's Master Plan (1) | 2 | 31 | Monday October 14, 1985 |
| Megatron's Master Plan (2) | 2 | 32 | Tuesday October 15, 1985 |
| Microbots | 2 | 27 | Monday October 7, 1985 |
| Money Is Everything | 3 | 90 | Monday November 17, 1986 |
| More Than Meets the Eye (1) | 1 | 1 | Monday September 17, 1984 |
| More Than Meets the Eye (2) | 1 | 2 | Tuesday September 18, 1984 |
| More Than Meets the Eye (3) | 1 | 3 | Wednesday September 19, 1984 |
| Nightmare Planet | 3 | 84 | Friday October 31, 1986 |
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