| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Planet of the Turtles | 4 | 9 | Thursday September 20, 1990 |
| Polly Wanna Pizza | 6 | 14 | Saturday October 31, 1992 |
| Poor Little Rich Turtle | 4 | 32 | Saturday November 10, 1990 |
| Raphael Drives 'Em Wild | 4 | 37 | Saturday November 24, 1990 |
| Raphael Knocks 'Em Dead | 4 | 19 | Saturday September 15, 1990 |
| Raphael Meets His Match | 4 | 21 | Saturday September 22, 1990 |
| Raphael Versus the Volcano | 5 | 8 | Saturday October 5, 1991 |
| Raphael, Turtle of a Thousand Faces | 5 | 14 | Saturday November 2, 1991 |
| Rebel Without a Fin | 4 | 29 | Saturday October 27, 1990 |
| Return of the Fly | 3 | 31 | Wednesday November 22, 1989 |
| Return of the Shredder | 2 | 1 | Saturday October 1, 1988 |
| Return of the Technodrome | 2 | 10 | Saturday December 3, 1988 |
| Return of the Turtleoid | 6 | 4 | Saturday September 26, 1992 |
| Revenge of the Fly | 7 | 22 | Saturday November 27, 1993 |
| Ring of Fire | 7 | 6 | Saturday October 2, 1993 |
| Rock Around the Block | 6 | 1 | Saturday September 19, 1992 |
| Rondo in New York | 4 | 8 | Wednesday September 19, 1990 |
| Rust Never Sleeps | 7 | 2 | Saturday September 18, 1993 |
| Shredder | 1 | 5 | Friday January 1, 1988 |
| Shredder Triumphant! | 7 | 27 | Saturday December 18, 1993 |
| Shredder's Mom | 4 | 5 | Friday September 14, 1990 |
| Shredder's New Sword | 7 | 8 | Saturday October 9, 1993 |
| Shredderville | 3 | 28 | Wednesday November 15, 1989 |
| Shreeka's Revenge | 6 | 7 | Saturday October 10, 1992 |
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