| Title | Season | Episode # | First Aired |
|---|---|---|---|
| Sky Turtles | 3 | 2 | Tuesday September 26, 1989 |
| Slash - The Evil Turtle from Dimension X | 4 | 22 | Saturday September 29, 1990 |
| Sleuth on the Loose | 6 | 16 | Saturday November 7, 1992 |
| Snakes Alive! | 6 | 13 | Saturday October 31, 1992 |
| Son of Return of the Fly II | 4 | 18 | Saturday September 15, 1990 |
| Splinter No More | 2 | 12 | Saturday December 17, 1988 |
| Splinter Vanishes | 4 | 36 | Saturday November 24, 1990 |
| Split-Second | 9 | 6 | Saturday October 21, 1995 |
| State of Shock | 8 | 3 | Saturday October 1, 1994 |
| Super Bebop and Mighty Rocksteady | 3 | 11 | Monday October 9, 1989 |
| Super Irma | 6 | 5 | Saturday October 3, 1992 |
| Superhero for a Day | 4 | 12 | Tuesday September 25, 1990 |
| Sword of Yurikawa | 6 | 9 | Saturday October 17, 1992 |
| Take Me to Your Leader | 3 | 19 | Thursday November 2, 1989 |
| Teenagers From Dimension X | 2 | 13 | Saturday December 24, 1988 |
| The Adventures of Rhino-Man (A.K.A .Rhino-Man) | 4 | 30 | Saturday November 3, 1990 |
| The Beginning of the End | 10 | 2 | Saturday September 21, 1996 |
| The Big Blow Out (3) | 3 | 44 | Friday February 9, 1990 |
| The Big Break-In (2) | 3 | 43 | Thursday February 8, 1990 |
| The Big Bug Blunder | 4 | 39 | Saturday December 1, 1990 |
| The Big Cufflink Caper! | 4 | 34 | Friday September 14, 1990 |
| The Big Rip-Off (1) | 3 | 42 | Wednesday February 7, 1990 |
| The Big Zipp Attack | 4 | 26 | Saturday October 20, 1990 |
| The Case Of The Killer Pizzas | 2 | 6 | Saturday November 5, 1988 |
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